PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G155400.1
Common NameB456_012G155400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 90aa    MW: 9810.99 Da    PI: 10.1749
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G155400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-091458344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         WT+   +l+ +a +q+ ++   +W  +a+ +g ++t++++k ++
  Gorai.012G155400.1 14 TWTPKQNKLFEKALAQFDKDtpdRWQNVAKAVGGNKTAEEVKRHY 58
                        7*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.574762IPR017877Myb-like domain
SMARTSM007178.0E-81164IPR001005SANT/Myb domain
SuperFamilySSF466893.59E-121369IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-41368IPR009057Homeodomain-like
PfamPF002492.0E-71458IPR001005SANT/Myb domain
CDDcd001671.10E-51458No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MASSSLRSKD SGPTWTPKQN KLFEKALAQF DKDTPDRWQN VAKAVGGNKT AEEVKRHYEI  60
LIQDLEHIES GRIPIPKYKS SGGGGNGGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-30883478RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6153531e-113JX615353.1 Gossypium hirsutum clone NBRI_GE59294 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458857.13e-61PREDICTED: protein RADIALIS-like 3
SwissprotF4JVB87e-34RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A0D2VZT45e-61A0A0D2VZT4_G
STRINGPOPTR_0009s11990.19e-43(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.14e-34RAD-like 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]